Detailed information of SNP:



SNP ID: sf0720673619(Gbrowse)

Chromosome: chr07

Position: 20673619
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 90.75% 9.25%
All Indica797 99.25% 0.75%
All Japonica496 77.62% 22.38%
Aus67 100.00% 0.00%
Indica I374 99.47% 0.53%
Indica II213 98.59% 1.41%
Indica Intermediate210 99.52% 0.48%
Temperate Japonica335 68.96% 31.04%
Tropical Japonica93 98.92% 1.08%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 42.86% 57.14%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0720673619 A->G LOC_Os07g34500(LOC_Os07g34500.1) Non-Synonymous SNP