Detailed information of SNP:
|
SNP ID:
sf0720673619(Gbrowse)
Chromosome: chr07 Position: 20673619 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.75% | 9.25% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 496 | 77.62% | 22.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 68.96% | 31.04% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720673619 | A->G | LOC_Os07g34500(LOC_Os07g34500.1) | Non-Synonymous SNP |