Detailed information of SNP:
|
SNP ID:
sf0720750955(Gbrowse)
Chromosome: chr07 Position: 20750955 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1223 | 73.34% | 26.66% |
| All Indica | 616 | 90.58% | 9.42% |
| All Japonica | 492 | 47.97% | 52.03% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 292 | 86.64% | 13.36% |
| Indica II | 158 | 92.41% | 7.59% |
| Indica Intermediate | 166 | 95.78% | 4.22% |
| Temperate Japonica | 334 | 29.04% | 70.96% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720750955 | T->A | INTERGENIC | None |