Detailed information of SNP:
|
SNP ID:
sf0720804933(Gbrowse)
Chromosome: chr07 Position: 20804933 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 97.78% | 2.22% |
| All Indica | 782 | 100.00% | 0.00% |
| All Japonica | 447 | 93.74% | 6.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 197 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 94.12% | 5.88% |
| Tropical Japonica | 86 | 97.67% | 2.33% |
| Japonica Intermediate | 55 | 85.45% | 14.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720804933 | C->T | INTERGENIC | None |