Detailed information of SNP:
|
SNP ID:
sf0720871452(Gbrowse)
Chromosome: chr07 Position: 20871452 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.02% | 6.98% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720871452 | G->A | INTERGENIC | None |