Detailed information of SNP:
|
SNP ID:
sf0720877462(Gbrowse)
Chromosome: chr07 Position: 20877462 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 58.39% | 41.61% |
| All Indica | 793 | 78.94% | 21.06% |
| All Japonica | 475 | 34.32% | 65.68% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 211 | 76.30% | 23.70% |
| Indica Intermediate | 208 | 60.58% | 39.42% |
| Temperate Japonica | 315 | 46.67% | 53.33% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720877462 | C->T | INTERGENIC | None |