Detailed information of SNP:
|
SNP ID:
sf0720878569(Gbrowse)
Chromosome: chr07 Position: 20878569 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 57.62% | 42.38% |
| All Indica | 788 | 34.90% | 65.10% |
| All Japonica | 413 | 92.25% | 7.75% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 23.45% | 76.55% |
| Indica II | 210 | 39.52% | 60.48% |
| Indica Intermediate | 207 | 50.72% | 49.28% |
| Temperate Japonica | 268 | 90.30% | 9.70% |
| Tropical Japonica | 78 | 97.44% | 2.56% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720878569 | C->T | INTERGENIC | None |