Detailed information of SNP:
|
SNP ID:
sf0720880556(Gbrowse)
Chromosome: chr07 Position: 20880556 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 89.98% | 10.02% |
| All Indica | 777 | 90.73% | 9.27% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 95.88% | 4.12% |
| Indica II | 208 | 81.73% | 18.27% |
| Indica Intermediate | 205 | 90.73% | 9.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720880556 | T->G | LOC_Os07g34840(LOC_Os07g34840.1) | Synonymous |