Detailed information of SNP:
|
SNP ID:
sf0720909694(Gbrowse)
Chromosome: chr07 Position: 20909694 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.67% | 8.33% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720909694 | A->G | INTERGENIC | None |