Detailed information of SNP:
|
SNP ID:
sf0720923034(Gbrowse)
Chromosome: chr07 Position: 20923034 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 52.89% | 47.11% |
| All Indica | 792 | 81.82% | 18.18% |
| All Japonica | 485 | 1.86% | 98.14% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 209 | 70.33% | 29.67% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 84 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720923034 | A->G | INTERGENIC | None |