Detailed information of SNP:
|
SNP ID:
sf0721012571(Gbrowse)
Chromosome: chr07 Position: 21012571 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 63.18% | 36.82% |
| All Indica | 792 | 93.18% | 6.82% |
| All Japonica | 496 | 12.50% | 87.50% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721012571 | A->G | INTERGENIC | None |