Detailed information of SNP:
|
SNP ID:
sf0721046456(Gbrowse)
Chromosome: chr07 Position: 21046456 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.52% | 48.48% |
| All Indica | 798 | 81.83% | 18.17% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721046456 | T->G | LOC_Os07g35140(LOC_Os07g35140.1) | INTRON |
| sf0721046456 | T->G | LOC_Os07g35140(LOC_Os07g35140.2) | INTRON |