Detailed information of SNP:
|
SNP ID:
sf0721063568(Gbrowse)
Chromosome: chr07 Position: 21063568 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 54.80% | 45.20% |
| All Indica | 794 | 85.52% | 14.48% |
| All Japonica | 496 | 12.10% | 87.90% |
| Aus | 60 | 8.33% | 91.67% |
| Indica I | 372 | 83.87% | 16.13% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721063568 | C->T | INTERGENIC | None |