Detailed information of SNP:
|
SNP ID:
sf0721069679(Gbrowse)
Chromosome: chr07 Position: 21069679 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 61.76% | 38.24% |
| All Indica | 781 | 75.29% | 24.71% |
| All Japonica | 497 | 36.62% | 63.38% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 366 | 78.69% | 21.31% |
| Indica II | 209 | 72.25% | 27.75% |
| Indica Intermediate | 206 | 72.33% | 27.67% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721069679 | T->C | INTERGENIC | None |