Detailed information of SNP:
|
SNP ID:
sf0721075193(Gbrowse)
Chromosome: chr07 Position: 21075193 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 58.39% | 41.61% |
| All Indica | 769 | 65.15% | 34.85% |
| All Japonica | 497 | 45.67% | 54.33% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 359 | 69.64% | 30.36% |
| Indica II | 204 | 62.25% | 37.75% |
| Indica Intermediate | 206 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 49.55% | 50.45% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721075193 | G->A | INTERGENIC | None |