Detailed information of SNP:
|
SNP ID:
sf0721099669(Gbrowse)
Chromosome: chr07 Position: 21099669 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1309 | 97.40% | 2.60% |
| All Indica | 690 | 95.65% | 4.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 327 | 96.64% | 3.36% |
| Indica II | 186 | 95.16% | 4.84% |
| Indica Intermediate | 177 | 94.35% | 5.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721099669 | A->C | LOC_Os07g35250(LOC_Os07g35250.1) | Non-Synonymous SNP |