Detailed information of SNP:
SNP ID:
sf0721117404(Gbrowse)
Chromosome: chr07 Position: 21117404 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1416 | 59.32% | 40.68% |
All Indica | 797 | 92.60% | 7.40% |
All Japonica | 497 | 1.21% | 98.79% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 211 | 81.99% | 18.01% |
Indica Intermediate | 211 | 92.42% | 7.58% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0721117404 | A->T | LOC_Os07g35280(LOC_Os07g35280.1) | INTRON |