Detailed information of SNP:
|
SNP ID:
sf0721127204(Gbrowse)
Chromosome: chr07 Position: 21127204 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 56.32% | 43.68% |
| All Indica | 786 | 30.79% | 69.21% |
| All Japonica | 480 | 90.83% | 9.17% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 26.09% | 73.91% |
| Indica II | 211 | 44.55% | 55.45% |
| Indica Intermediate | 207 | 25.12% | 74.88% |
| Temperate Japonica | 334 | 89.82% | 10.18% |
| Tropical Japonica | 80 | 87.50% | 12.50% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721127204 | G->A | INTERGENIC | None |