Detailed information of SNP:
|
SNP ID:
sf0721128137(Gbrowse)
Chromosome: chr07 Position: 21128137 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 63.59% | 36.41% |
| All Indica | 794 | 92.32% | 7.68% |
| All Japonica | 482 | 11.00% | 89.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 325 | 1.54% | 98.46% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721128137 | G->C | LOC_Os07g35300(LOC_Os07g35300.1) | Synonymous |