Detailed information of SNP:
|
SNP ID:
sf0721133705(Gbrowse)
Chromosome: chr07 Position: 21133705 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.79% | 47.21% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721133705 | G->A | LOC_Os07g35310(LOC_Os07g35310.2) | INTRON |
| sf0721133705 | G->A | LOC_Os07g35310(LOC_Os07g35310.1) | INTRON |