Detailed information of SNP:
|
SNP ID:
sf0721159152(Gbrowse)
Chromosome: chr07 Position: 21159152 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 53.01% | 46.99% |
| All Indica | 782 | 19.44% | 80.56% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 9.14% | 90.86% |
| Indica II | 210 | 31.43% | 68.57% |
| Indica Intermediate | 200 | 26.00% | 74.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721159152 | A->T | INTERGENIC | None |