Detailed information of SNP:
|
SNP ID:
sf0721164832(Gbrowse)
Chromosome: chr07 Position: 21164832 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 59.49% | 40.51% |
| All Indica | 795 | 79.75% | 20.25% |
| All Japonica | 495 | 34.55% | 65.45% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 373 | 87.67% | 12.33% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 49.55% | 50.45% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721164832 | T->C | INTERGENIC | None |