Detailed information of SNP:
|
SNP ID:
sf0721164895(Gbrowse)
Chromosome: chr07 Position: 21164895 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 68.13% | 31.87% |
| All Indica | 796 | 88.19% | 11.81% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721164895 | C->A | INTERGENIC | None |