Detailed information of SNP:
|
SNP ID:
sf0721178512(Gbrowse)
Chromosome: chr07 Position: 21178512 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 98.03% | 1.97% |
| All Indica | 792 | 99.62% | 0.38% |
| All Japonica | 453 | 95.14% | 4.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 306 | 93.46% | 6.54% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 96.43% | 3.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721178512 | A->T | INTERGENIC | None |