Detailed information of SNP:
|
SNP ID:
sf0721226083(Gbrowse)
Chromosome: chr07 Position: 21226083 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.88% | 35.12% |
| All Indica | 798 | 46.12% | 53.88% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 21.60% | 78.40% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721226083 | A->G | INTERGENIC | None |