Detailed information of SNP:
|
SNP ID:
sf0721297967(Gbrowse)
Chromosome: chr07 Position: 21297967 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 59.04% | 40.96% |
| All Indica | 797 | 34.63% | 65.37% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721297967 | G->A | LOC_Os07g35580(LOC_Os07g35580.1) | Non-Synonymous SNP |