Detailed information of SNP:
|
SNP ID:
sf0721302282(Gbrowse)
Chromosome: chr07 Position: 21302282 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 60.14% | 39.86% |
| All Indica | 793 | 31.78% | 68.22% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 373 | 24.40% | 75.60% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 207 | 52.17% | 47.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721302282 | G->A | LOC_Os07g35600(LOC_Os07g35600.1) | INTRON |