Detailed information of SNP:
|
SNP ID:
sf0721302642(Gbrowse)
Chromosome: chr07 Position: 21302642 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 77.79% | 22.21% |
| All Indica | 792 | 61.11% | 38.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 373 | 35.92% | 64.08% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 206 | 74.27% | 25.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721302642 | T->C | LOC_Os07g35600(LOC_Os07g35600.1) | INTRON |