Detailed information of SNP:
|
SNP ID:
sf0721322343(Gbrowse)
Chromosome: chr07 Position: 21322343 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.76% | 48.24% |
| All Indica | 799 | 74.59% | 25.41% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721322343 | A->C | INTERGENIC | None |