Detailed information of SNP:
|
SNP ID:
sf0721324222(Gbrowse)
Chromosome: chr07 Position: 21324222 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 55.90% | 44.10% |
| All Indica | 789 | 80.23% | 19.77% |
| All Japonica | 497 | 13.88% | 86.12% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 210 | 80.95% | 19.05% |
| Indica Intermediate | 205 | 73.66% | 26.34% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721324222 | C->G | INTERGENIC | None |