Detailed information of SNP:
|
SNP ID:
sf0721330241(Gbrowse)
Chromosome: chr07 Position: 21330241 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 60.88% | 39.12% |
| All Indica | 794 | 32.62% | 67.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 24.40% | 75.60% |
| Indica II | 212 | 28.30% | 71.70% |
| Indica Intermediate | 209 | 51.67% | 48.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721330241 | T->A | INTERGENIC | None |