Detailed information of SNP:
|
SNP ID:
sf0721339097(Gbrowse)
Chromosome: chr07 Position: 21339097 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.19% | 40.81% |
| All Indica | 797 | 29.74% | 70.26% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 21.93% | 78.07% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721339097 | G->T | INTERGENIC | None |