Detailed information of SNP:
|
SNP ID:
sf0721350487(Gbrowse)
Chromosome: chr07 Position: 21350487 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 88.47% | 11.53% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 493 | 84.99% | 15.01% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 331 | 80.36% | 19.64% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721350487 | T->C | INTERGENIC | None |