Detailed information of SNP:
|
SNP ID:
sf0721355849(Gbrowse)
Chromosome: chr07 Position: 21355849 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 73.84% | 26.16% |
| All Japonica | 497 | 36.22% | 63.78% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721355849 | G->A | INTERGENIC | None |