Detailed information of SNP:
|
SNP ID:
sf0721356305(Gbrowse)
Chromosome: chr07 Position: 21356305 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.52% | 29.48% |
| All Indica | 799 | 80.23% | 19.77% |
| All Japonica | 496 | 64.72% | 35.28% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 334 | 82.04% | 17.96% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721356305 | A->G | INTERGENIC | None |