Detailed information of SNP:
|
SNP ID:
sf0721362553(Gbrowse)
Chromosome: chr07 Position: 21362553 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1295 | 55.06% | 44.94% |
| All Indica | 742 | 78.30% | 21.70% |
| All Japonica | 433 | 24.71% | 75.29% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 338 | 91.42% | 8.58% |
| Indica II | 209 | 78.47% | 21.53% |
| Indica Intermediate | 195 | 55.38% | 44.62% |
| Temperate Japonica | 301 | 6.98% | 93.02% |
| Tropical Japonica | 74 | 91.89% | 8.11% |
| Japonica Intermediate | 58 | 31.03% | 68.97% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721362553 | G->A | LOC_Os07g35660(LOC_Os07g35660.1) | INTRON |