Detailed information of SNP:
|
SNP ID:
sf0721363917(Gbrowse)
Chromosome: chr07 Position: 21363917 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.53% | 33.47% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 495 | 35.76% | 64.24% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 333 | 18.32% | 81.68% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721363917 | T->C | LOC_Os07g35660(LOC_Os07g35660.1) | INTRON |