Detailed information of SNP:
|
SNP ID:
sf0721375426(Gbrowse)
Chromosome: chr07 Position: 21375426 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.79% | 24.21% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 495 | 47.88% | 52.12% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 333 | 34.53% | 65.47% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721375426 | A->T | INTERGENIC | None |