Detailed information of SNP:
|
SNP ID:
sf0721381206(Gbrowse)
Chromosome: chr07 Position: 21381206 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 92.33% | 7.67% |
| All Indica | 794 | 99.12% | 0.88% |
| All Japonica | 478 | 79.71% | 20.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 322 | 93.17% | 6.83% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721381206 | A->G | INTERGENIC | None |