Detailed information of SNP:
|
SNP ID:
sf0721414424(Gbrowse)
Chromosome: chr07 Position: 21414424 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 84.63% | 15.37% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721414424 | G->T | LOC_Os07g35750(LOC_Os07g35750.2) | Synonymous |
| sf0721414424 | G->T | LOC_Os07g35750(LOC_Os07g35750.1) | Synonymous |