Detailed information of SNP:
|
SNP ID:
sf0721414812(Gbrowse)
Chromosome: chr07 Position: 21414812 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 78.93% | 21.07% |
| All Indica | 796 | 90.83% | 9.17% |
| All Japonica | 496 | 67.74% | 32.26% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 334 | 58.68% | 41.32% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721414812 | T->C | LOC_Os07g35750(LOC_Os07g35750.2) | INTRON |
| sf0721414812 | T->C | LOC_Os07g35750(LOC_Os07g35750.1) | INTRON |