Detailed information of SNP:
|
SNP ID:
sf0721415122(Gbrowse)
Chromosome: chr07 Position: 21415122 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.12% | 21.88% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 496 | 67.74% | 32.26% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 58.68% | 41.32% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721415122 | A->T | LOC_Os07g35750(LOC_Os07g35750.2) | INTRON |
| sf0721415122 | A->T | LOC_Os07g35750(LOC_Os07g35750.1) | INTRON |