Detailed information of SNP:
|
SNP ID:
sf0721438679(Gbrowse)
Chromosome: chr07 Position: 21438679 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 72.30% | 27.70% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 44.27% | 55.73% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 53.13% | 46.87% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721438679 | G->A | LOC_Os07g35800(LOC_Os07g35800.1) | INTRON |