Detailed information of SNP:
|
SNP ID:
sf0721443382(Gbrowse)
Chromosome: chr07 Position: 21443382 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 71.83% | 28.17% |
| All Indica | 767 | 93.48% | 6.52% |
| All Japonica | 492 | 44.92% | 55.08% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 349 | 94.84% | 5.16% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 334 | 30.54% | 69.46% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721443382 | T->C | LOC_Os07g35810(LOC_Os07g35810.1) | Non-Synonymous SNP |