Detailed information of SNP:
|
SNP ID:
sf0721443666(Gbrowse)
Chromosome: chr07 Position: 21443666 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 67.10% | 32.90% |
| All Indica | 782 | 87.98% | 12.02% |
| All Japonica | 476 | 38.45% | 61.55% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 368 | 87.50% | 12.50% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 202 | 83.66% | 16.34% |
| Temperate Japonica | 324 | 24.69% | 75.31% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 59 | 52.54% | 47.46% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721443666 | C->T | LOC_Os07g35810(LOC_Os07g35810.1) | Synonymous |