Detailed information of SNP:
|
SNP ID:
sf0721448582(Gbrowse)
Chromosome: chr07 Position: 21448582 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 75.44% | 24.56% |
| All Indica | 793 | 94.70% | 5.30% |
| All Japonica | 495 | 51.11% | 48.89% |
| Aus | 65 | 33.85% | 66.15% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 333 | 39.04% | 60.96% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721448582 | G->A | INTERGENIC | None |