Detailed information of SNP:
|
SNP ID:
sf0721460367(Gbrowse)
Chromosome: chr07 Position: 21460367 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.48% | 40.52% |
| All Indica | 797 | 69.13% | 30.87% |
| All Japonica | 494 | 49.19% | 50.81% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 333 | 36.04% | 63.96% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721460367 | T->A | INTERGENIC | None |