Detailed information of SNP:
|
SNP ID:
sf0721485573(Gbrowse)
Chromosome: chr07 Position: 21485573 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 67.70% | 32.30% |
| All Indica | 793 | 88.90% | 11.10% |
| All Japonica | 450 | 34.44% | 65.56% |
| Aus | 61 | 63.93% | 36.07% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 302 | 42.05% | 57.95% |
| Tropical Japonica | 87 | 2.30% | 97.70% |
| Japonica Intermediate | 61 | 42.62% | 57.38% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721485573 | G->A | INTERGENIC | None |