Detailed information of SNP:
|
SNP ID:
sf0721518380(Gbrowse)
Chromosome: chr07 Position: 21518380 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 97.00% | 3.00% |
| All Indica | 786 | 95.80% | 4.20% |
| All Japonica | 491 | 98.37% | 1.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 95.89% | 4.11% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721518380 | A->C | LOC_Os07g35970(LOC_Os07g35970.1) | Non-Synonymous SNP |