Detailed information of SNP:
|
SNP ID:
sf0721620496(Gbrowse)
Chromosome: chr07 Position: 21620496 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.78% | 33.22% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721620496 | C->T | LOC_Os07g36180(LOC_Os07g36180.2) | UTR_5_PRIME |
| sf0721620496 | C->T | LOC_Os07g36180(LOC_Os07g36180.1) | UTR_5_PRIME |