Detailed information of SNP:
|
SNP ID:
sf0721633669(Gbrowse)
Chromosome: chr07 Position: 21633669 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 98.63% | 1.37% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 466 | 95.92% | 4.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 94.34% | 5.66% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721633669 | A->G | LOC_Os07g36210(LOC_Os07g36210.1) | INTRON |